子宫内膜癌中与PTEN相关的piRNA通路基因对预后的影响

Influence of piRNA pathway genes associated with PTEN on prognosis in endometrial cancer

  • 摘要:
    目的 探讨子宫内膜癌中与磷酸酶及张力蛋白同源物(PTEN)相关的Piwi相互作用RNA(piRNA)通路基因对预后的影响。
    方法 基于癌症基因组图谱(TCGA)数据库筛选553例子宫体子宫内膜癌(UCEC)肿瘤样本以及35例正常样本,获取子宫内膜癌中与PTEN相关的piRNA通路基因信息。基于差异基因筛选、单因素Cox回归分析和LASSO Cox回归分析,构建并验证风险预后模型。利用蛋白质相互作用(PPI)网络和cytoHubba挑选Hub基因,并进行免疫浸润分析。
    结果 筛选出167个差异表达基因,进一步确定了18个与患者预后相关的基因。LASSO Cox回归分析筛选出11个与子宫内膜癌预后密切相关的基因(DUSP6PTENMDM2MAGI2RAC3AKT2CDK6KITIKBKBBRAFE2F2), 构建的风险预测模型在训练集和验证集中的曲线下面积(AUC)分别为0.780和0.733。PPI网络分析发现PTENAKT2MDM2KIT是重要基因。高风险组患者的CD8 T细胞浸润比例较低,且树突状细胞(DC细胞)从静止状态转换为激活状态。
    结论 筛选出的11个基因可能影响肿瘤的发展和免疫应答,或可作为子宫内膜癌预后的生物标志物。

     

    Abstract:
    Objective To investigate the prognostic impact of Piwi-interacting RNA (piRNA) pathway genes associated with phosphatase and tensin homolog (PTEN) in endometrial cancer.
    Methods Based on The Cancer Genome Atlas (TCGA) database, 553 tumor samples of uterine corpus endometrial carcinoma (UCEC) and 35 normal samples were screened to obtain information on PTEN-associated piRNA pathway genes in endometrial cancer. A risk prognosis model was constructed and validated through differential gene screening, univariate Cox regression analysis, and LASSO Cox regression analysis. Protein-protein interaction (PPI) network and cytoHubba were employed to select Hub genes, followed by immune infiltration analysis.
    Results A total of 167 differentially expressed genes were identified, and 18 genes associated with prognosis of patients were further determined. LASSO Cox regression analysis identified 11 genes (DUSP6, PTEN, MDM2, MAGI2, RAC3, AKT2, CDK6, KIT, IKBKB, BRAF, E2F2) that were closely related to the prognosis of endometrial cancer. The constructed risk prediction model yielded area under the curve (AUC) values of 0.780 and 0.733 in the training and validation sets, respectively. PPI network analysis revealed that PTEN, AKT2, MDM2, and KIT were key genes. Patients in the high-risk group exhibited a lower proportion of CD8 T cell infiltration and a transition of dendritic cells from a resting state to an activated state.
    Conclusion The 11 identified genes may influence tumor development and immune response, and could serve as biomarkers for the prognosis of endometrial cancer.

     

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