Visualization analysis in studies of gut microbes and inflammatory bowel disease
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摘要:目的
分析2013年1月—2022年10月肠道微生物与炎症性肠病(IBD)的研究热点和发展趋势。
方法通过Web of Science检索关于肠道微生物与IBD的文献,采用可视化软件CiteSpace、VOSviewer进行分析。
结果共检索到1 041篇文献,排除重复文献后,共纳入1 040篇。2021年发文数量达到最高峰。肠道微生物与IBD研究的主要研究者是XAVIER R J, 共发表13篇文献。美国是发文量最多的国家,哈佛大学是发文最多的机构, PLoS One是该领域发表文献最多的期刊。“IBD”“克罗恩病”“肠道菌群”为该领域研究热点; “肠道屏障”“疗效”“稳态”为该领域研究前沿。
结论肠道微生物与IBD研究领域发展前景良好,该领域的研究可为IBD的治疗提供新思路。
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关键词:
- 肠道微生物 /
- 炎症性肠病 /
- 文献计量学 /
- 可视化分析 /
- CiteSpace软件 /
- VOSviewer软件
Abstract:ObjectiveTo analyze the research hotspot and development trend of intestinal microbes and inflammatory bowel disease (IBD) from from January 2013 to October 2022.
MethodsLiterature on intestinal microbes and IBD was retrieved through Web of Science, and analyzed by visualization software CiteSpace and VOSviewer.
ResultsA total of 1 041 literatures were retrieved and 1 040 were included after excluding duplicates. The number of publications reached its peak in 2021. XAVIER R J was the main researcher of the study on intestinal microbes and IBD, and a total of 13 papers had been published. The United States was the country with the most publications, Harvard University was the institution with the most publications, and PLoS One was the journal with the most publications in the field. The "IBD" "Crohn′s disease" and "intestinal flora" were hot topics in this field, and "Intestinal barrier" "curative effect" as well as "homeostasis" were the research frontiers in this field.
ConclusionThe research on intestinal microbiome and IBD has a good prospect, and the research in this field can provide new ideas for the treatment of IBD.
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表 1 肠道微生物与IBD研究的发文量前10的国家
排名 国家 发文量 总被引频次 篇均被引次数 占比/% 1 美国 379 27 138 71.60 36.44 2 中国 294 6 340 21.56 28.27 3 加拿大 83 4 024 48.48 7.98 4 德国 66 3 773 57.17 6.35 5 英国 53 2 990 56.42 5.10 6 日本 48 1 563 32.56 4.62 7 荷兰 47 2 870 61.06 4.52 8 澳大利亚 43 1 758 40.88 4.13 8 法国 43 2 360 54.88 4.13 10 意大利 42 1 285 30.60 4.04 表 2 肠道微生物与IBD研究中心度前10的国家
排名 国家 年份 中心度 发文量/篇 1 美国 2013 0.39 379 2 荷兰 2013 0.24 47 3 英国 2013 0.16 53 4 中国 2013 0.14 294 5 德国 2013 0.13 66 5 西班牙 2013 0.13 24 7 加拿大 2013 0.11 83 7 意大利 2013 0.11 42 9 日本 2013 0.10 48 10 澳大利亚 2013 0.07 43 表 3 肠道微生物与IBD研究中心度排名前5的机构
排名 机构 年份 中心度 发文量/篇 1 Univ Calif San Diego 2018 0.13 10 2 Sun Yat Sen Univ 2016 0.10 14 2 Shanghai Jiao Tong Univ 2017 0.10 11 4 Katholieke Univ Leuven 2020 0.09 5 5 Harvard Med Sch 2016 0.08 19 表 4 发文量和被引频次排名前6的作者
排名 作者 发文量/篇 排名 作者 共被引频次/次 1 RAMNIK J XAVIER 13 1 HARRY SOKOL 241 2 EUGENE B CHANG 10 2 R BALFOUR SARTOR 191 2 HUTTENHOWER CURTIS 10 3 ALEXANDER SWIDSINSKI 171 4 WILLEM M DE VOS 8 4 J GREGORY CAPORASO 159 4 ROB KNIGHT 8 4 DANIEL N FRANK 159 4 JAMES VERSALOVIC 8 6 PETER J TURNBAUGH 157 表 5 发文量排名前10位的基金资助机构
排名 基金资助机构 发文量/篇 构成比/% 1 United States Department Of Health Human Services 259 24.90 2 National lnstitutes Of Health Nih Usa 257 24.71 3 National Natural Science Foundation Of China Nsfc 164 15.77 4 Nih National lnstitute Of Diabetes Digestive Kidney Diseases Niddk 111 10.67 5 Nih National lnstitute Of Allergy Infectious Diseases Niaid 64 6.15 6 European Commission 57 5.48 7 Nih National Cancer Institute Nci 47 4.52 8 Nih National lnstitute Of General Medical Sciences Nigms 42 4.04 9 German Research Foundation Dfg 30 2.88 10 Uk Research lnnovation Ukri 24 2.31 表 6 微生物与IBD相关研究的发文前5位期刊的各项指标
排名 期刊 发文量/篇 被引频次/次 篇均被引次数/次 2021年影响因子 JCR分区 1 PLoS One 47 1 669 35.51 3.752 Q2 2 Inflammatory Bowel Disease 36 1 678 46.61 7.29 Q1 3 Frontiers in Microbiology 31 774 24.97 6.064 Q1 4 Gastroenterology 29 4 256 146.76 33.883 Q1 5 Gut Microbes 25 941 37.64 9.434 Q1 表 7 研究中排名前10位的关键词
排名 关键词 频次/次 中心度 1 inflammatory bowel disease 556 0.01 2 Crohn′s disease 286 0.02 3 gut microbiota 263 0.02 4 ulcerative colitis 259 0.03 5 bacteria 103 0.02 6 expression 97 0.02 7 diversity 93 0.03 8 fecal microbiota 86 0.03 8 intestinal microbiota 86 0.03 10 pathogenesis 78 0.02 -
[1] SZIGETHY E, MCLAFFERTY L, GOYAL A. Inflammatory bowel disease[J]. Child Adolesc Psychiatr Clin N Am, 2010, 19(2): 301-318. doi: 10.1016/j.chc.2010.01.007
[2] MONTELEONE G, FINA D, CARUSO R, et al. New mediators of immunity and inflammation in inflammatory bowel disease[J]. Curr Opin Gastroenterol, 2006, 22(4): 361-364. doi: 10.1097/01.mog.0000231808.10773.8e
[3] KASER A, ZEISSIG S, BLUMBERG R S. Inflammatory bowel disease[J]. Annu Rev Immunol, 2010, 28: 573-621. doi: 10.1146/annurev-immunol-030409-101225
[4] FRANK D N, ST AMAND A L, FELDMAN R A, et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases[J]. Proc Natl Acad Sci U S A, 2007, 104(34): 13780-13785. doi: 10.1073/pnas.0706625104
[5] 杨坤, 甘丽华, 郭超峰. 基于Citespace软件的消化性溃疡研究的可视化分析[J]. 实用临床医药杂志, 2021, 25(5): 1-6. doi: 10.7619/jcmp.20201499 [6] ZHENG K Y, WANG X Q. Publications on the association between cognitive function and pain from 2000 to 2018: a bibliometric analysis using CiteSpace[J]. Med Sci Monit, 2019, 25: 8940-8951. doi: 10.12659/MSM.917742
[7] WAQAS A, TEOH S H, LAPÃO L V, et al. Harnessing telemedicine for the provision of health care: bibliometric and scientometric analysis[J]. J Med Internet Res, 2020, 22(10): e18835. doi: 10.2196/18835
[8] VAN ECK N J, WALTMAN L. Software survey: VOSviewer, a computer program for bibliometric mapping[J]. Scientometrics, 2010, 84(2): 523-538. doi: 10.1007/s11192-009-0146-3
[9] 张凯, 张晓勃, 施锦涛, 等. 间充质干细胞治疗椎间盘退行性疾病: 基于Web of Science数据库的文献计量及可视化分析[J]. 中国组织工程研究, 2021, 25(19): 3031-3038. https://www.cnki.com.cn/Article/CJFDTOTAL-XDKF202119017.htm [10] ALEKSANDAR D, KOSTIC. The microbiome in inflammatory bowel disease: current status and the future ahead[J]. Gastroenterology, 2014, 146(6): 1489-1499. doi: 10.1053/j.gastro.2014.02.009
[11] CHANG P V, HAO L M, OFFERMANNS S, et al. The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition[J]. Proc Natl Acad Sci U S A, 2014, 111(6): 2247-2252.
[12] KELLY C J, ZHENG L, CAMPBELL E L, et al. Crosstalk between microbiota-derived short-chain fatty acids and intestinal epithelial HIF augments tissue barrier function[J]. Cell Host Microbe, 2015, 17(5): 662-671. doi: 10.1016/j.chom.2015.03.005
[13] HENKE M T, KENNY D J, CASSILLY C D, et al. Ruminococcus gnavus, a member of the human gut microbiome associated with Crohn′s disease, produces an inflammatory polysaccharide[J]. Proc Natl Acad Sci USA, 2019, 116(26): 12672-12677. doi: 10.1073/pnas.1904099116
[14] BONDER M J, KURILSHIKOV A, TIGCHELAAR E F, et al. The effect of host genetics on the gut microbiome[J]. Nat Genet, 2016, 48(11): 1407-1412. doi: 10.1038/ng.3663
[15] CHU N D, CROTHERS J W, NGUYEN L T T, et al. Dynamic colonization of microbes and their functions after fecal microbiota transplantation for inflammatory bowel disease[J]. mBio, 2021, 12(4): e0097521. doi: 10.1128/mBio.00975-21
[16] WLODARSKA M, LUO C W, KOLDE R, et al. Indoleacrylic acid produced by commensal Peptostreptococcus species suppresses inflammation[J]. Cell Host Microbe, 2017, 22(1): 25-37. e6. doi: 10.1016/j.chom.2017.06.007
[17] 尹硕鑫, 张涛, 卢鑫, 等. 粪菌移植研究的文献计量学和可视化分析[J]. 微生物学通报, 2022, 49(7): 2875-2887. doi: 10.13344/j.microbiol.china.211109 [18] 陈琴, 娄龙, 杨文治, 等. 肠道菌群与溃疡性结肠炎相关性研究的文献计量及可视化分析[J]. 微生物学通报, 2022, 49(11): 4918-4933. doi: 10.13344/j.microbiol.china.220362 [19] WILSON B C, VATANEN T, CUTFIELD W S, et al. The super-donor phenomenon in fecal microbiota transplantation[J]. Front Cell Infect Microbiol, 2019, 9: 2. doi: 10.3389/fcimb.2019.00002
[20] MACHIELS K, JOOSSENS M, SABINO J, et al. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis[J]. Gut, 2014, 63(8): 1275-1283. doi: 10.1136/gutjnl-2013-304833
[21] HABERMAN Y, TICKLE T L, DEXHEIMER P J, et al. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature[J]. J Clin Invest, 2014, 124(8): 3617-3633.
[22] DI SEGNI A, BRAUN T, BENSHOSHAN M, et al. Guided protocol for fecal microbial characterization by 16S rRNA-amplicon sequencing[J]. J Vis Exp, 2018(133): 56845.
[23] XIANG X W, ZHOU X L, WANG R, et al. Protective effect of tuna bioactive peptide on dextran sulfate sodium-induced colitis in mice[J]. Mar Drugs, 2021, 19(3): 127. doi: 10.3390/md19030127
[24] WANG R X, LEE J S, CAMPBELL E L, et al. Microbiota-derived butyrate dynamically regulates intestinal homeostasis through regulation of actin-associated protein synaptopodin[J]. Proc Natl Acad Sci U S A, 2020, 117(21): 11648-11657. doi: 10.1073/pnas.1917597117
[25] KE X B, YOU K, PICHAUD M, et al. Gut bacterial metabolites modulate endoplasmic reticulum stress[J]. Genome Biol, 2021, 22(1): 292. doi: 10.1186/s13059-021-02496-8
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